基于全基因组测序的ICU环境中肺炎克雷伯菌耐药及分子特征分析
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R181.3+2

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上海市加强公共卫生体系建设三年行动计划(2023-2025年)重点学科(GWVI-11.1-02);上海市浦东新区科委项目(PKJ2024-Y78);浦东新区疾控中心级科技项目(PDCDC-2023-02)


Antimicrobial resistance and molecular characteristics of Klebsiella pneumoniae in intensive care unit environment based on whole genome sequencing
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    摘要:

    目的 了解医疗机构综合重症监护病房(ICU)环境中肺炎克雷伯菌(KP)、高毒力肺炎克雷伯菌(hvKP)、耐碳青霉烯类肺炎克雷伯菌(CRKP)及高毒耐碳青霉烯类肺炎克雷伯菌(hv-CRKP/CR-hvKP)的分布特征,为ICU环境评估与医院感染防控提供参考。方法 2019、2023年共采集上海市医疗机构综合ICU 3 336份环境标本,分离菌株后进行药敏试验和全基因组测序。结果 KP检出率为1.59%(53株),其中hvKP、CRKP、hv-CRKP/CR-hvKP分别占总检出数的37.74%(20/53)、52.83%(28/53)、24.53%(13/53)。hvKP主要为ST11-KL64、ST11-KL25,CRKP主要为ST15-KL19、ST11-KL25,hv-CRKP/CR-hvKP主要为ST11-KL25、ST11-KL64。主要携带的耐药基因有fosA、oqxAB、tet(A)、blaTEM-1BblaKPC-2qnrS11等。所有菌株均携带毒力基因fimH、iutA、entA、entB、entC、entD、entE、entF,仅1株检出rmpA基因。结论 医疗机构综合ICU环境中KP污染广泛,以ST11和ST15为优势,呈多态性分布。CRKP和hvKP占比较高,且多重耐药情况严峻。KP存在耐药与毒力共进化的情形,提示综合ICU环境污染对患者具有感染和致病危害,临床需加强重视并警惕暴发风险。

    Abstract:

    Objective To investigate the distribution characteristics of Klebsiella pneumoniae (KP), hypervirulent Klebsiella pneumoniae (hvKP), carbapenem-resistant Klebsiella pneumoniae (CRKP), and hypervirulent carbapenem-resistant Klebsiella pneumoniae (hv-CRKP/CR-hvKP) in the environment of general intensive care unit (ICU) at medical institutions, and provide reference for environment assessment as well as healthcare-associated infection (HAI) prevention and control in ICU. Methods A total of 3 336 environmental specimens were collected from general ICUs of medical institutions in Shanghai in 2019 and 2023. After strain isolation, antimicrobial susceptibility testing and whole genome sequencing were conducted. Results The detection rate of KP was 1.59% (n=53), among which hvKP, CRKP, and hv-CRKP/CR-hvKP accounted for 37.74% (20/53), 52.83% (28/53), and 24.53% (13/53) of the total detected strains, respectively. The main types of hvKP were ST11-KL64 and ST11-KL25, CRKP were ST15-KL19 and ST11-KL25, hv-CRKP/CR-hvKP were ST11-KL25 and ST11-KL64. The main carried resistance genes included fosA, oqxAB, tet(A), blaTEM-1B, blaKPC-2, qnrS11, etc. All strains carried virulence genes fimH, iutA, entA, entB, entC, entD, entE, and entF, with only one strain carrying rmpA gene. Conclusion KP contamination is widespread in general ICU environment of medical institutions, predominantly ST11 and ST15, presenting a polymorphic distribution. CRKP and hvKP account for a relatively high proportion, and multidrug resistance is serious. Co-evolution of drug resistance and virulence presents in KP, and poses significant infection and pathogenic risks to patients, necessitating enhanced clinical vigilance and preparedness for potential outbreaks.

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杨博雯,王远萍,徐依盈,等.基于全基因组测序的ICU环境中肺炎克雷伯菌耐药及分子特征分析[J]. 中国感染控制杂志,2025,24(9):1229-1236. DOI:10.12138/j. issn.1671-9638.20257358.
YANG Bowen, WANG Yuanping, XU Yiying, et al. Antimicrobial resistance and molecular characteristics of Klebsiella pneumoniae in intensive care unit environment based on whole genome sequencing[J]. Chin J Infect Control, 2025,24(9):1229-1236. DOI:10.12138/j. issn.1671-9638.20257358.

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  • 收稿日期:2024-12-30
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  • 在线发布日期: 2025-09-23
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